GARNet Workshop on 3D RNA-Seq Analysis Tool

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Published on: August 6, 2019

October 24th-25th 2019. University of Leeds.

Researchers at the James Hutton Institute and the University of Dundee-Plant Sciences have developed the 3D RNA-Seq Analysis Tool for the comprehensive differential expression, alternative splicing analysis and visualisation of RNASeq Data.

This program runs the analysis through a user-friendly graphical interface, can handle complex experimental designs, allows user setting of statistical parameters, visualizes the results through graphics and tables, and generates publication quality figures and customerised analysis reports.

It is designed to be run by biologists with minimal bioinformatics experience (or by bioinformaticians) allowing lab scientists to take control of the analysis of their RNA-seq data.

In order to provide training in this new software tool GARNet are hosting a workshop at the University of Leeds that is led by the creators of the 3D App, Wenbin Guo and Runxuan Zhang.

This workshop will take places at the University of Leeds and is hosted by GARNet Committee Member Yoselin Benitez-Alfonso.

Workshop Date: Thursday October 24th 12pm until Friday October 25th 5pm.

Location: Leeds Institute for Data Analytics, University of Leeds, Leeds, LS2 9JT

Workshop Cost: £30

Number of Delegates: Around 20

Further details on how to apply can be found on the workshop website:

Workshop Schedule

Thursday October 24th 2019

12pm: Arrival and Lunch

1.15pm: Yoselin Benitez-Alfonso– Welcome to the University of Leeds

1.30pm: Runxuan Zhang– A suite of computational solutions for improved gene and transcript level analysis using RNA-seq.

2.30pm: Presenter fropm Earlham Institute- Data management hands-on session: Taking care of your data.

4.00pm: Tea Break

4.30pm: Pingtao Ding, The Sainsbury Laboratory, Norwich- Proof of Concept: Using the 3D RNA-Seq app to analyse expression changes under different immune activation conditions.

5.30pm: Runxuan Zhang and Wenbin Guo– Preparation for the hands on session: downloading the data, etc

7pm: Evening meal and drinks in Leeds

Friday October 25th 2019

9.00am: Runxuan Zhang and Wenbin Guo- Hands on session with 3D RNA-Seq App

10.30am: Tea Break

11.00am: Hands on session with 3D RNA-Seq App, continued

11.45am: Recapping main features of 3D RNA-Seq App and General Q+A

1.00pm: Lunch and General Meeting end

2.00pm: 1-2-1 sessions on analysis of own data.
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